rete
playground
Select
hsa-mir-21 on the genome, from BOTH coordinate sources
Chromosome
Start
End
+2
chr17
59,841,266
59,841,337
…
chr17
59,841,266
59,841,337
…
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Run this query in the playground →
2 rows · 951 ms · 2.3 MB of 39.2 MB read over HTTP range · no server, no download — the query runs in your browser.
The query
PREFIX mb: <https://w3id.org/rete/mirbase#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX faldo: <http://biohackathon.org/resource/faldo#> SELECT ?chr ?start ?end ?assembly ?source WHERE { ?hp rdfs:label "hsa-mir-21" ; mb:location ?r . ?r faldo:reference/rdfs:label ?chr ; mb:coordinateSource/rdfs:label ?source ; faldo:begin/faldo:position ?start ; faldo:end/faldo:position ?end . OPTIONAL { ?r mb:assembly/rdfs:label ?assembly } }
rete playground
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github.com/caviri/rete